#!/bin/sh

FROM="/var/dist"
TO="/var/dist2"
EXCLUDE="move.txt"

cd "$FROM"

ls -1 | while read F ; do
  [[ "$F" != "." ]] && continue
  [[ "$F" != ".." ]] && continue
  F2=`cat "$EXCLUDE" | grep "$F"`
  [[ "$F" != "$F2" ]] && echo "mv './$F' '$TO'"
done

pushd /var/dist
mv $(ls | grep -v -f move.txt) /var/trash
popd

import os
dirname='.'
filename='filelist'
for i in list(set(os.listdir(dirname)).difference(open(filename).read().split()): print i

$ cat ./move.txt 
2.txt
3/3.txt

$ for y in `seq 3`; do mkdir -p "/from_dir/${y}"; for x in `seq 5`; do touch "./from_dir/${y}/${x}.txt"; done; done;

$ ls -R 
.:
from_dir  move.txt

./from_dir:
1  2  3
./from_dir/1:
1.txt  2.txt  3.txt  4.txt  5.txt
./from_dir/2:
1.txt  2.txt  3.txt  4.txt  5.txt
./from_dir/3:
1.txt  2.txt  3.txt  4.txt  5.txt

$ rsync -a --exclude-from=./move.txt --remove-source-files ./from_dir/ ./to_dir/

$ ls -R 
.:
from_dir  move.txt  to_dir

./from_dir:
1  2  3
./from_dir/1:
2.txt
./from_dir/2:
2.txt
./from_dir/3:
2.txt  3.txt

./to_dir:
1  2  3
./to_dir/1:
1.txt  3.txt  4.txt  5.txt
./to_dir/2:
1.txt  3.txt  4.txt  5.txt
./to_dir/3:
1.txt  4.txt  5.txt